PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_928517g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 153aa    MW: 16979.2 Da    PI: 7.1928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_928517g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-17148555
             AP2  5 GVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                    GVr+++ +g+++AeIrd       + +r++lg+f tae+Aa a+++a+ k++g
  MA_928517g0010  1 GVRQRP-WGKFAAEIRD----SarQGARVWLGTFNTAEDAALAYDRAAYKMRG 48
                    9*****.**********....33334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-31162IPR001471AP2/ERF domain
PROSITE profilePS5103221.918156IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-21158IPR016177DNA-binding domain
PfamPF008471.9E-12148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-29157IPR001471AP2/ERF domain
CDDcd000182.44E-29156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
GVRQRPWGKF AAEIRDSARQ GARVWLGTFN TAEDAALAYD RAAYKMRGSK ALLNFPLNVA  60
LGNNHTEEKP DSNGENFLQN LTTKKRERSS SDEVDSGREC RVKLEEITRE ADVMSKGMVD  120
ELLCGRLPTP PLTPSGIDMS FSNFLCPGQL MVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-31162869ATERF1
2gcc_A1e-31162869ATERF1
1gcc_A2e-31159563ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1031891e-161BT103189.1 Picea glauca clone GQ0208_B04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304302.11e-31hypothetical protein POPTR_0003s07910g
SwissprotQ9LW481e-32ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLJ7H3852e-94J7H385_PINAR; Transcription factor 3 (Fragment)
STRINGPOPTR_0003s07910.13e-31(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-22ethylene responsive element binding factor 2